cluster_set-up
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[[sidebar]] | [[sidebar]] | ||
- | [[DT]] | ||
- | Listed below are instructions for setting up accounts on deepthought1 (DT1) and deepthought2 (DT2) located at UMD. | ||
- | //Instructions//: | + | ===Instructions |
- | You will assigned one or both clusters based on your simulation needs by Dr. Klauda. These instructions work for both, so do these on the cluster(s) you are assigned. Dr. Klauda will submit a request to add you as a user to my account on DT1 and/or DT2. Once this is done, you should get a generic email from IT regarding the resource. | + | Local Zaratan Cluster: [[ZT1]] |
- | Details | + | ===Details |
- | http:// | + | [[Stampede2]] |
- | Now for the cluster setup: | + | [[Bridges]] |
- | If you are not familiar with the use of LINUX, I would first go through some on-line tutorials for commands to use in LINUX and here ([[Linux Guide]]). To login to DT1 (login.deepthought.umd.edu) or DT2 (login.deepthought2.umd.edu) with Windows you will need to have PuTTY ([[Extra Software]]) to connect to deepthought: | + | [[Comet]] |
- | http:// | + | [[Rockfish]] |
- | And the following program will be useful to transfer files between deepthought and your computer | + | [[Expanse]] |
- | http:// | + | ===Backups of DATA=== |
- | Built-in commands for MAC users can be used to connect via the command line (scp) and apps for file transfer (eg, cyberduck). | + | Data on Zaratan must be backed up. |
- | + | ||
- | Then, take a general look at the website of the HPCC OIT to get a general idea on how to login and submit jobs. Your jobs should not run in your home directory. | + | |
- | + | ||
- | <code commend> pico .cshrc.mine </ | + | |
- | + | ||
- | At the end of the file add the following line: | + | |
- | + | ||
- | <code commend> unset noclobber </ | + | |
- | + | ||
- | This is needed for the simulations to allow for files to write over existing files. | + | |
- | + | ||
- | One more recent change is that you will need to allow me to look into your /lustre files. | + | |
- | + | ||
- | <code commend> | + | |
- | chmod a+r . | + | |
- | chmod -R a+r * | + | |
- | find . -type d -exec chmod a+x {} \; </ | + | |
+ | Data Backup: [[Backup]] | ||
cluster_set-up.1479326025.txt.gz · Last modified: 2016/11/16 14:53 (external edit)